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Author:
pyrovelocity team
License:
AGPL-3.0-only
Summary:
A multivariate RNA Velocity model to estimate future cell states with uncertainty using probabilistic modeling with pyro.
Latest version:
0.4.5
Required dependencies:
adjusttext
|
altair
|
anndata
|
anyio
|
appdirs
|
arviz
|
astropy
|
beartype
|
chex
|
click
|
colorlog
|
daft
|
diffrax
|
dill
|
diskcache
|
duckdb
|
einops
|
expression
|
flax
|
frozenlist
|
fsspec
|
greenlet
|
h5py
|
httpx
|
ibis-framework
|
jax
|
jaxlib
|
jaxtyping
|
leidenalg
|
lightning
|
llvmlite
|
matplotlib
|
mlflow
|
numpyro
|
pandas
|
pillow
|
plumbum
|
polars
|
pyarrow
|
pydantic
|
pyro-ppl
|
pytorch-lightning
|
pyyaml
|
returns
|
rich
|
scanpy
|
scikit-learn
|
scipy
|
scvelo
|
scvi-tools
|
seaborn
|
sparse
|
statsmodels
|
sympy
|
termcolor
|
tiledb
|
torch
|
torchmetrics
|
trio
|
validators
|
vegafusion
|
vegafusion-python-embed
|
vl-convert-python
|
zstandard
Optional dependencies:
black
|
coverage
|
dataclasses-json
|
dulwich
|
flytekit
|
furo
|
google-api-python-client
|
hydra-core
|
hydra-zen
|
hypothesis
|
ipdb
|
ipython
|
ipywidgets
|
jupyter-cache
|
jupyterlab
|
jupytext
|
mashumaro
|
matplotlib-venn
|
mypy
|
myst-parser
|
nbconvert
|
nbformat
|
nbsphinx
|
omegaconf
|
papermill
|
pre-commit
|
pre-commit-hooks
|
pyensembl
|
pyfaidx
|
pygments
|
pytest
|
pytest-asyncio
|
pytest-cov
|
pytest-mock
|
pytest-xdist
|
python-dotenv
|
quartodoc
|
rich-click
|
ruff
|
sphinx
|
sphinx-autobuild
|
sphinx-autodoc-typehints
|
sphinx-click
|
sphinx-copybutton
|
sphinx-markdown-builder
|
xdoctest
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