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Author:
Sebastian Birk, Mohammad Vali Sanian
License:
BSD 3-Clause License
Copyright (c) 2026, Lotfollahi Lab
Redistribution and use in source and binary forms, with or without
modification, are permitted provide...
Summary:
Spatial transcriptomics foundation model
Latest version:
0.1.13
Required dependencies:
anndata
|
datasets
|
leidenalg
|
matplotlib
|
numpy
|
pandas
|
peft
|
pyensembl
|
pyyaml
|
requests
|
scanpy
|
scib-metrics
|
scikit-learn
|
scikit-misc
|
scipy
|
session-info
|
setuptools
|
squidpy
|
torch
|
tqdm
|
transformers
Optional dependencies:
cellphonedb
|
coverage
|
docutils
|
gdown
|
geomloss
|
huggingface-hub
|
ipykernel
|
ipython
|
jupyterlab
|
myst-nb
|
omnipath
|
pandas
|
pre-commit
|
pytest
|
sphinx
|
sphinx-autodoc-typehints
|
sphinx-book-theme
|
sphinx-copybutton
|
sphinx-design
|
sphinxcontrib-bibtex
|
sphinxext-opengraph
|
twine
|
wandb
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