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Author:
None
License:
MIT
Summary:
ChatSpatial: Natural language-driven spatial transcriptomics analysis via Model Context Protocol (MCP) integration
Latest version:
1.2.6
Required dependencies:
aiohttp
|
anndata
|
celldex
|
click
|
igraph
|
jinja2
|
leidenalg
|
matplotlib
|
mcp
|
numpy
|
pandas
|
petsc4py
|
pillow
|
pydantic
|
scanpy
|
scikit-learn
|
scipy
|
seaborn
|
singlecellexperiment
|
singler
|
slepc4py
|
squidpy
|
umap-learn
Optional dependencies:
adjusttext
|
anndata2ri
|
bbknn
|
black
|
cell2location
|
cellphonedb
|
cellrank
|
enrichmap
|
esda
|
fastccc
|
flashdeconv
|
graphst
|
gseapy
|
harmonypy
|
infercnvpy
|
isort
|
liana
|
libpysal
|
mllmcelltype
|
mudata
|
mypy
|
networkx
|
palantir
|
paste-bio
|
pot
|
pre-commit
|
pybanksy
|
pydeseq2
|
pygam
|
pysal
|
pytest
|
pytest-asyncio
|
rpy2
|
ruff
|
scanorama
|
scikit-gstat
|
scikit-misc
|
scvelo
|
scvi-tools
|
spagcn
|
spatialdata
|
spatialde
|
splot
|
statannotations
|
statsmodels
|
tangram-sc
|
torch
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