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Author:
Chen Yang
Summary:
ChatSpatial: Natural language-driven spatial transcriptomics analysis via Model Context Protocol (MCP) integration
Latest version:
1.5.10
Required dependencies:
anndata
|
anyio
|
certifi
|
click
|
cloudpickle
|
cryptography
|
flashs
|
igraph
|
leidenalg
|
matplotlib
|
mcp
|
numba
|
numpy
|
pandas
|
pillow
|
pydantic
|
scanpy
|
scikit-learn
|
scipy
|
seaborn
|
squidpy
|
statsmodels
|
typing-extensions
|
umap-learn
|
zarr
Optional dependencies:
aestetik
|
anndata2ri
|
bbknn
|
biopython
|
black
|
build
|
cell2location
|
celldex
|
cellphonedb
|
cellrank
|
dolomite-base
|
enrichmap
|
esda
|
fastccc-modern
|
flashdeconv
|
graphst-modern
|
gseapy
|
harmonypy
|
infercnvpy
|
iranges
|
isort
|
knncolle
|
liana
|
libpysal
|
mllmcelltype
|
mypy
|
networkx
|
palantir
|
paste-modern
|
pot
|
pre-commit
|
pybanksy
|
pydeseq2
|
pytest
|
pytest-asyncio
|
rctd-py
|
requests
|
rpy2
|
ruff
|
scanorama
|
scvelo-modern
|
scvi-tools
|
singlecellexperiment
|
singler
|
spagcn-modern
|
spatialde-modern
|
stagate-modern
|
stalign-modern
|
tangram-sc
|
torch
|
twine
|
types-requests
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