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Author:
Gregor Sturm
License:
BSD 3-Clause License
Copyright (c) 2022, Gregor Sturm
All rights reserved.
Redistribution and use in source and binary forms, with or without
modifica...
Summary:
Infercnv is a scalable python library to infer copy number variation (CNV) events from single cell transcriptomics data. It is heavliy inspired by InferCNV, but plays nicely with scanpy and is much more scalable.
Latest version:
0.6.1
Required dependencies:
anndata
|
leidenalg
|
numpy
|
pandas
|
pybiomart
|
pycairo
|
pyreadr
|
pytest-benchmark
|
pytoml
|
scanpy
|
session-info
|
tqdm
Optional dependencies:
coverage
|
docutils
|
gtfparse
|
ipykernel
|
jupyter-client
|
myst-nb
|
openpyxl
|
pandas
|
pre-commit
|
pycairo
|
pytest
|
rpy2
|
setuptools
|
sphinx
|
sphinx-autodoc-typehints
|
sphinx-book-theme
|
sphinx-copybutton
|
sphinxcontrib-bibtex
|
sphinxext-opengraph
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