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Author:
None
License:
GPL-3.0
Summary:
BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. It reduces the spatial clustering problem to a previously solved problem--generic graph based clustering--by augmenting transcriptional signatures with transcriptional features averaged over spatial microenvironments.
Latest version:
1.3.4
Required dependencies:
anndata
|
h5py
|
leidenalg
|
matplotlib
|
numpy
|
pandas
|
python-igraph
|
scanpy
|
scikit-learn
|
scipy
|
seaborn
|
umap-learn
Optional dependencies:
ipykernel
|
jupyter
|
pytest
|
rpy2
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