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Author:
None
License:
GNU GENERAL PUBLIC LICENSE
Version 3, 29 June 2007
Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/>
Everyone is permitted ...
Summary:
OmicVerse: A single pipeline for exploring the entire transcriptome universe
Latest version:
2.2.3
Required dependencies:
adjusttext
|
anndata
|
biotite
|
chembl_webresource_client
|
datetime
|
gemmi
|
geopandas
|
huggingface_hub
|
igraph
|
ipywidgets
|
joblib
|
lazyslide
|
marsilea
|
matplotlib
|
mcp
|
meeko
|
multiprocess
|
networkx
|
numba
|
numpy
|
omicverse-notebook
|
omicverse-skills
|
openai
|
pandas
|
plotly
|
py3dmol
|
pymonocle3-bio
|
rdkit
|
requests
|
scanpy
|
scikit-image
|
scikit-learn
|
scikit-misc
|
scipy
|
seaborn
|
shapely
|
spatialdata
|
statsmodels
|
tiffslide
|
timm
|
tqdm
|
transformers
|
vina
|
wsidata
|
zarr
Optional dependencies:
anndata
|
anndataoom
|
arviz
|
beautifulsoup4
|
boltons
|
cytoolz
|
discord.py
|
dynamo-release
|
einops
|
ete3
|
frozendict
|
gdown
|
graphtools
|
httpx
|
kaleido
|
ktplotspy
|
leidenalg
|
lifelines
|
memento-de
|
metatime
|
mofax
|
nbformat
|
numpy
|
omicclaw
|
pandas
|
pertpy
|
pillow
|
pyalakazam
|
pycoloc
|
pycytotrace-bio
|
pydecontx
|
pydeqms
|
pydeseq2
|
pydestiny-bio
|
pydowser
|
pyfastcar
|
pygam
|
pygithub
|
pygliph
|
pygoslin
|
pyimmunarch
|
pyimputelcmd
|
pyldsc
|
pylipidr
|
pymatrixeqtl
|
pymfuzz
|
pymsstats
|
pymupdf
|
pyolinkanalyze
|
pyproda
|
pysccdc
|
pyscdrs
|
pyscoper
|
pyscorpius
|
pyshazam
|
pysoupx
|
pysusie
|
pytest
|
pytest-asyncio
|
python-telegram-bot
|
pytigger
|
pytscan
|
pytwas
|
pytwosamplemr
|
pyurd-bio
|
requests
|
s3fs
|
scikit-bio
|
scikit-misc
|
scvi-tools
|
squidpy
|
statsmodels
|
tangram-sc
|
tensorboard
|
tomli
|
torch
|
torch-geometric
|
torchdr
|
toytree
|
wandb
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