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py-shazam is a Python port of the R/CRAN package 'shazam' (Immunoglobulin
Somatic Hypermutation Analysis), part of the Immcantation framework,
developed by the Kleinstein Lab at Yale U...
Summary:
Pure-Python port of the R/CRAN package shazam -- immunoglobulin somatic hypermutation (SHM) analysis: distance-to-nearest, clonal threshold, SHM targeting models, mutation profiling and BASELINe selection analysis.
Latest version:
0.1.0
Required dependencies:
matplotlib
|
numpy
|
pandas
|
scipy
Optional dependencies:
diptest
|
pytest
|
pytest-cov
|
ruff
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