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Author:
Tomás Bordoy García-Carpintero, Lucas Alexander Damberg Torp Dyssel
License:
Apache-2.0
Summary:
BEASTsim (BEnchmarking and Analysis of Spatial Transcriptomics simulations) is an advanced benchmarking framework designed to assess the performance of various simulation techniques used in spatial transcriptomics. This tool provides standardized testing and evaluation metrics, enabling researchers to compare different spatial transcriptomics simulators and provides tools for analysis of such spatial data.
Latest version:
0.1.5
Required dependencies:
absl-py
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aiohappyeyeballs
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aiohttp
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aiosignal
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anndata
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anyio
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argon2-cffi
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argon2-cffi-bindings
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array_api_compat
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arrow
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asttokens
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async-lru
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async-timeout
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attrs
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babel
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beautifulsoup4
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bleach
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cell2location
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certifi
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cffi
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charset-normalizer
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chex
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click
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colorama
|
comm
|
contextlib2
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contourpy
|
cycler
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debugpy
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decorator
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defusedxml
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docrep
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etils
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exceptiongroup
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executing
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fastjsonschema
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filelock
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flax
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fonttools
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fqdn
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frozenlist
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fsspec
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get-annotations
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h11
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h5py
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httpcore
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httpx
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humanize
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idna
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importlib_metadata
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importlib_resources
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ipykernel
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ipython
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isoduration
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jax
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jaxlib
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jedi
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jinja2
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joblib
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json5
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jsonpointer
|
jsonschema
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jsonschema-specifications
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jupyter-events
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jupyter-lsp
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jupyter_client
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jupyter_core
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jupyter_server
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jupyter_server_terminals
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jupyterlab
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jupyterlab_pygments
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jupyterlab_server
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kaleido
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kiwisolver
|
ks
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legacy-api-wrap
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lightning
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lightning-utilities
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llvmlite
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markdown-it-py
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markupsafe
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matplotlib
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matplotlib-inline
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mdurl
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memory-profiler
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mistune
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ml-collections
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ml_dtypes
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mpmath
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msgpack
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mudata
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multidict
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multipledispatch
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naivede
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natsort
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nbclient
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nbconvert
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nbformat
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nest-asyncio
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networkx
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notebook
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notebook_shim
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numba
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numpy
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numpyro
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opencv-python
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opt_einsum
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optax
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orbax-checkpoint
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overrides
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packaging
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pandas
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pandocfilters
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parso
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patsy
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pillow
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platformdirs
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plotly
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prometheus_client
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prompt_toolkit
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propcache
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protobuf
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psutil
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pure_eval
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pycparser
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pygments
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pynndescent
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pyparsing
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pyro-api
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pyro-ppl
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python-dateutil
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python-json-logger
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pytorch-lightning
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pytz
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pyyaml
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pyzmq
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referencing
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requests
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rfc3339-validator
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rfc3986-validator
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rich
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rpds-py
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scanpy
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scikit-learn
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scipy
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scvi-tools
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seaborn
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send2trash
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session-info
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six
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sniffio
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soupsieve
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spatialde
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stack-data
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statsmodels
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stdlib-list
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sympy
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tangram
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tenacity
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tensorstore
|
terminado
|
threadpoolctl
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tinycss2
|
tomli
|
toolz
|
torch
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torchmetrics
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tornado
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tqdm
|
traitlets
|
types-python-dateutil
|
typing_extensions
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tzdata
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tzlocal
|
umap-learn
|
uri-template
|
urllib3
|
wcwidth
|
webcolors
|
webencodings
|
websocket-client
|
yarl
|
zipp
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