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Author:
Michael Volk
Summary:
Provenance-first experimental data for the S. cerevisiae virtual cell: sha256-pinned dataset loaders, a knowledge graph, and models
Latest version:
1.8.4
Required dependencies:
adjusttext
|
aiohttp
|
attrs
|
beartype
|
bibtexparser
|
biocypher
|
biopython
|
cliff
|
cobra
|
deepdiff
|
fastapi
|
fastjsonschema
|
filelock
|
geomloss
|
geoparse
|
gffutils
|
goatools
|
h5py
|
hydra-core
|
hypernetx
|
intermine
|
lightning
|
lmdb
|
matplotlib
|
matplotlib-venn
|
memory-profiler
|
neo4j
|
networkx
|
nxontology
|
openpyxl
|
owlready2
|
pandas
|
pandas-stubs
|
pip-tools
|
plotly
|
pre-commit
|
pronto
|
pyarrow
|
pydantic
|
pydot
|
pyreadr
|
python-dotenv
|
python-semantic-release
|
pyzotero
|
rdata
|
rdkit
|
scikit-image
|
scikit-learn
|
scipy
|
seaborn
|
sentencepiece
|
snakeviz
|
sortedcontainers
|
torch
|
torch-geometric
|
torchmetrics
|
transformers
|
twine
|
types-requests
|
types-tqdm
|
umap-learn
|
unidecode
|
uvicorn
|
wandb
|
wandb-osh
|
xlrd
Optional dependencies:
mypy
|
pip-tools
|
pytest
|
ruff
|
semantic-release
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