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Author:
Florian Heyl
License:
MIT License
Copyright (c) 2026 heylf
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentatio...
Summary:
spoQC is a modular framework for multimodal quality control (QC) of imaging-based spatially resolved transcriptomics (SRT).
Latest version:
0.0.1
Required dependencies:
anndata
|
dask
|
dask-ml
|
esda
|
funkyheatmappy
|
geopandas
|
ipython
|
kaleido
|
leidenalg
|
libpysal
|
matplotlib
|
matplotlib-venn
|
nbformat
|
networkx
|
numba
|
numcodecs
|
numpy
|
opencv-python
|
ovrlpy
|
pandas
|
plotly
|
pyarrow
|
rasterio
|
requests
|
scanpy
|
scikit-image
|
scikit-learn
|
scipy
|
seaborn
|
shapely
|
spatialdata
|
spatialdata-io
|
spatialdata-plot
|
tqdm
|
zarr
Optional dependencies:
build
|
myst-nb
|
myst-parser
|
pytest
|
ruff
|
sphinx
|
sphinx-autodoc-typehints
|
sphinx-book-theme
|
sphinx-copybutton
|
sphinxcontrib-bibtex
|
twine
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