PyPI page
Author:
Joseph McKenna
License:
MIT License
Copyright (c) 2024 jkmckenna
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated document...
Summary:
Single Molecule Footprinting Analysis in Python.
Latest version:
2.21.0
Required dependencies:
anndata
|
biopython
|
click
|
dask
|
igraph
|
joblib
|
leidenalg
|
matplotlib
|
numpy
|
pandas
|
psutil
|
pyarrow
|
pysam
|
scikit-learn
|
scipy
|
seaborn
|
skops
|
tensorly
|
torch
|
tqdm
|
umap-learn
|
zarr
Optional dependencies:
build
|
captum
|
duckdb
|
edlib
|
hatch
|
hatch-vcs
|
hydra-core
|
igraph
|
ipython
|
leidenalg
|
lightning
|
matplotlib
|
multiqc
|
myst-nb
|
myst-parser
|
nbsphinx
|
networkx
|
omegaconf
|
pod5
|
pre-commit
|
pybedtools
|
pybigwig
|
pynndescent
|
pysam
|
pytest
|
pytest-cov
|
pyyaml
|
readthedocs-sphinx-search
|
ruff
|
scikit-learn
|
seaborn
|
setuptools
|
shap
|
skops
|
sphinx
|
sphinx-autodoc-typehints
|
sphinx-book-theme
|
sphinx-click
|
sphinx-copybutton
|
sphinx-design
|
sphinxcontrib-bibtex
|
sphinxext-opengraph
|
statsmodels
|
tensorly
|
torch
|
twine
|
umap-learn
|
upsetplot
|
wandb
|
xarray
|
xgboost
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