PyPI page
Author:
Ori Kronfeld
License:
BSD 3-Clause License
Copyright (c) 2026, Ori Kronfeld, Weizmann Institute of Science
All rights reserved.
Redistribution and use in source and binary forms, w...
Summary:
Consolidated spatial transcriptomics analysis toolkit with variational inference methods
Latest version:
0.1.7
Required dependencies:
anndata
|
igraph
|
joblib
|
lightning
|
numpy
|
pandas
|
pyro-ppl
|
rich
|
scanpy
|
scikit-learn
|
scipy
|
scvi-tools
|
sparse
|
statsmodels
|
torch
|
tqdm
Optional dependencies:
biopython
|
boto3
|
cell2location
|
cugraph
|
cugraph-cu12
|
cugraph-cu13
|
cuml
|
cuml-cu12
|
cuml-cu13
|
cupy
|
cupy-cuda12x
|
cupy-cuda13x
|
dvc
|
fcswrite
|
gdown
|
geomloss
|
huggingface-hub
|
jupyter
|
leidenalg
|
matplotlib
|
mlx
|
mlx-metal
|
numba
|
plotnine
|
pooch
|
pynndescent
|
rapids-singlecell
|
rapids-singlecell-cu12
|
rapids-singlecell-cu13
|
readfcs
|
scrublet
|
seaborn
|
spatialdata
|
squidpy
|
torch-geometric
|
torch-xla
|
torchaudio
|
torchvision
|
umap-learn
Downloads last day:
8
Downloads last week:
85
Downloads last month:
231
7-day smoothing