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Author:
Xufeng Chen
License:
BSD 3-Clause License
Copyright (c) 2024, Cancer System Biology Lab
All rights reserved.
Redistribution and use in source and binary forms, with or without
...
Summary:
scMagnify is a versatile Python toolkit for inferring and analyzing gene regulatory networks (GRNs) from single-cell multi-omic datasets
Latest version:
0.1.1
Required dependencies:
anndata
|
cellrank
|
decoupler
|
deprecated
|
genomepy
|
moods-python
|
mudata
|
netgraph
|
pillow
|
pooch
|
pyarrow
|
pycirclize
|
pycomplexheatmap
|
pygam
|
pyranges
|
pysam
|
pytabix
|
rich
|
scanpy
|
seacells
|
session-info
|
tensorly
|
torch
Optional dependencies:
coverage
|
docutils
|
ipykernel
|
ipython
|
myst-nb
|
pandas
|
pre-commit
|
pytest
|
setuptools
|
sphinx
|
sphinx-autodoc-typehints
|
sphinx-book-theme
|
sphinx-copybutton
|
sphinx-design
|
sphinx-tabs
|
sphinxcontrib-bibtex
|
sphinxcontrib-mermaid
|
sphinxext-opengraph
|
tox
|
twine
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