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Author:
Craig Myles
Summary:
Read OME-Zarr whole-slide images and emit patch- and slide-level foundation-model embeddings - storage backend and model independently swappable.
Latest version:
0.2.1
Required dependencies:
jsonschema
|
numpy
|
pydantic
|
pyyaml
|
tqdm
|
typer
Optional dependencies:
einops
|
einops-exts
|
environs
|
fairscale
|
fsspec
|
gdown
|
geopandas
|
h5py
|
huggingface-hub
|
imagecodecs
|
ngff-zarr
|
ninja
|
numcodecs
|
ome-zarr
|
omegaconf
|
open-clip-torch
|
opencv-python-headless
|
packaging
|
pandas
|
peft
|
pillow
|
psutil
|
pyarrow
|
pynvml
|
raw2features
|
s3fs
|
sacremoses
|
safetensors
|
scanpy
|
scikit-learn
|
segmentation-models-pytorch
|
setuptools
|
shapely
|
spatialdata
|
tifffile
|
timm
|
torch
|
torchvision
|
transformers
|
wheel
|
xformers
|
zarr
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