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Author:
Hui-Feng He
License:
MIT
Summary:
High-resolution spatial transcriptomics analysis toolkit
Latest version:
0.1.4
Required dependencies:
anndata
|
leidenalg
|
matplotlib
|
numpy
|
opencv-python
|
pandas
|
pillow
|
pot
|
python-igraph
|
qpsolvers
|
ray
|
requests
|
scanpy
|
scikit-image
|
scikit-learn
|
scipy
|
tqdm
Optional dependencies:
einops
|
gseapy
|
gurobipy
|
lightning
|
pyro-ppl
|
pyscipopt
|
pytorch-lightning
|
scvi-tools
|
shapely
|
statsmodels
|
torch
|
torchvision
|
transformers
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