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Author:
Srinivasa Rao Rao
License:
MIT License
Copyright (c) 2026 Srinivasa Rao Rao
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated ...
Summary:
PALMS (Provenance-Aware Linking of Multimodal Spatial-omics) — a napari-based viewer that brings spatial transcriptomics, histology and genomic overlays into one coordinate space, and records every action as replayable code
Latest version:
1.0.1
Required dependencies:
adjusttext
|
anndata
|
colorcet
|
dask
|
dask-image
|
geopandas
|
igraph
|
leidenalg
|
magicgui
|
matplotlib
|
napari
|
networkx
|
numcodecs
|
numpy
|
omnipath
|
opencv-python
|
pandas
|
pillow
|
platformdirs
|
pyarrow
|
pygments
|
pyqt6
|
qtpy
|
scanpy
|
scikit-image
|
scikit-learn
|
scipy
|
seaborn
|
shapely
|
spatialdata
|
spatialdata-io
|
squidpy
|
superqt
|
tifffile
|
tqdm
|
umap-learn
|
xarray
|
zarr
Optional dependencies:
anndata2ri
|
celltypist
|
fastmcp
|
infercnvpy
|
insitucnv-copykat
|
ipykernel
|
napari-mcp
|
nbclient
|
nbformat
|
novae
|
pytest
|
pytorch-lightning
|
rasterio
|
readfcs
|
rpy2
|
ruff
|
torch
|
torch-geometric
|
xgboost
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