PyPI page
Author:
Nathan C. Frey
Summary:
Language models for Biological Sequence Transformation and Evolutionary Representation.
Latest version:
0.0.16
Required dependencies:
beignet
|
biopandas
|
biopython
|
datasets
|
datasketch
|
dgeb
|
dotenv
|
edlib
|
einops
|
huggingface-hub
|
hydra-core
|
hydra-submitit-launcher
|
lightning
|
litdata
|
onnx
|
onnxruntime
|
onnxscript
|
pandas
|
peft
|
polars
|
pooch
|
pyarrow
|
python-dotenv
|
rdkit
|
s3fs
|
scikit-learn
|
scipy
|
seaborn
|
tokenizers
|
torch
|
torcheval
|
torchmetrics
|
torchvision
|
tqdm
|
transformers
|
universal-pathlib
|
wandb
Optional dependencies:
accelerate
|
biopandas
|
biotite
|
boto3
|
botocore
|
cpdb-protein
|
fastmcp
|
flash-attn
|
icecream
|
lightning-utilities
|
loguru
|
matplotlib
|
mcp
|
mini3di
|
mpmath
|
omegaconf
|
optree
|
polars
|
pydantic
|
python-levenshtein
|
rotary-embedding-torch
|
selfies
|
tensordict
|
torch-cluster
|
torch-geometric
|
torch-scatter
|
torch-spline-conv
|
trl
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