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Author:
Goncalo Rei Pinto
License:
MIT License
Copyright (c) 2025, Goncalo Rei Pinto
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated...
Summary:
A package for biological embeddings in the perturbation experimental space
Latest version:
0.1.1
Required dependencies:
anndata
|
biopython
|
broad-babel
|
cirpy
|
huggingface-hub
|
ipywidgets
|
matplotlib
|
numpy
|
pandas
|
protobuf
|
pyarrow
|
pyensembl
|
pysam
|
rdkit
|
requests
|
scikit-learn
|
scipy
|
seaborn
|
sentencepiece
|
session-info
|
torch-geometric
|
transformers
Optional dependencies:
arc-stack
|
arc-state
|
boltz
|
borzoi-pytorch
|
cell-eval
|
coverage
|
docutils
|
enformer-pytorch
|
esm
|
evo-model
|
evo2
|
h5py
|
helical
|
ipykernel
|
ipython
|
jump-portrait
|
lamindb
|
mamba-ssm
|
minimol
|
myst-nb
|
pertpy
|
pillow
|
pre-commit
|
pytest
|
pytest-mock
|
scanpy
|
setuptools
|
sphinx
|
sphinx-autodoc-typehints
|
sphinx-book-theme
|
sphinx-copybutton
|
sphinx-tabs
|
sphinxcontrib-bibtex
|
sphinxext-opengraph
|
torch
|
transformers
|
twine
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