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Author:
Chen-Rui Xia
License:
MIT
Summary:
DECIPHER for learning disentangled cellular embeddings in large-scale heterogeneous spatial omics data
Latest version:
0.3.2
Required dependencies:
bs4
|
einops
|
harmony-pytorch
|
ipython
|
leidenalg
|
loguru
|
pip
|
pytorch-lightning
|
pyyaml
|
ray
|
rui-utils
|
scanpy
|
scikit-learn
|
scikit-misc
|
tensorboard
|
torch
|
torch-geometric
|
torchaudio
|
torchvision
|
transformers
Optional dependencies:
black
|
isort
|
jinja2
|
jupyter
|
jupyter-contrib-nbextensions
|
jupytext
|
myst-parser
|
nbformat
|
nbsphinx
|
papermill
|
pre-commit
|
py-spy
|
pytest
|
pytest-cov
|
pytest-sugar
|
pytest-xdist
|
sphinx
|
sphinx-autodoc-typehints
|
sphinx-copybutton
|
sphinx-gallery
|
sphinx-intl
|
sphinx-rtd-theme
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