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Author:
Ziwei Xue
Summary:
STFD: Series of deep learning-based foundation models for spatial transcriptomic data analysis
Latest version:
0.0.1
Required dependencies:
accelerate
|
anndata
|
biopython
|
datasets
|
einops
|
ema-pytorch
|
labw-utils
|
logomaker
|
matplotlib
|
numba
|
numpy
|
omegaconf
|
opencv-python
|
pandas
|
pytorch-fid
|
pytorch-lightning
|
scanpy
|
scatlasvae
|
scikit-image
|
scikit-learn
|
seaborn
|
sinfonia
|
tabulate
|
transformers
Optional dependencies:
faiss-cpu
|
faiss-gpu
|
nbsphinx
|
sphinx
|
sphinx-hoverxref
|
sphinx-rtd-theme
|
torch
|
torchaudio
|
torchvision
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