stereopy

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Author: None
License: MIT License
Summary: Spatial transcriptomic analysis in python.
Latest version: 1.6.2
Required dependencies: anndata | arboreto | bokeh | cell-bin | colorcet | dask | datashader | distinctipy | distributed | fastcluster | fbpca | gefpy | geosketch | gtfparse | h5py | harmonypy | holoviews | hotspotsc | hvplot | imageio | joblib | kdepy | leidenalg | loompy | louvain | lxml | matplotlib | natsort | numba | numpy | opencv-python | packaging | pandas | panel | param | patsy | phenograph | pillow | plotly | pot | pyarrow | pycirclize | pyscenic | requests | scikit-image | scikit-learn | scipy | seaborn | setuptools | shapely | slideio | spatialpandas | sqlalchemy | squidpy | statsmodels | tifffile | tqdm | typing-extensions | umap-learn | urllib3 | xarray
Optional dependencies: albumentations | cell-bin | cusingler | fastremap | nbformat | onnxruntime | onnxruntime-gpu | patchify | pygam | pysal | quantecon | roifile | stereopy | tables | tensorflow | torch | torch_cluster | torch_geometric | torch_scatter | torch_sparse | torchvision

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