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Author:
Aleksandr Prilipko
Summary:
Comprehensive spatial transcriptomics analysis library with advanced segmentation, clustering, and spatial analysis tools
Latest version:
0.3.1059
Required dependencies:
aicsimageio
|
anndata
|
bfio
|
bioformats-jar
|
cellpose
|
cmake
|
csbdeep
|
cython
|
dask
|
decoupler
|
fastapi
|
flax
|
fsspec
|
imagecodecs
|
imageio-ffmpeg
|
jax
|
jaxlib
|
jaxtyping
|
jpype1
|
keras
|
leidenalg
|
louvain
|
mrc
|
nd2
|
numcodecs
|
numexpr
|
numpy
|
ome-types
|
opencv-python
|
opencv-python-headless
|
packaging
|
pandas
|
pegasusio
|
pegasuspy
|
phenograph
|
pillow
|
protobuf
|
pyarrow
|
pydantic
|
pydantic-core
|
pydantic-extra-types
|
requests
|
scanpy
|
scikit-image
|
scikit-learn
|
scikit-misc
|
scipy
|
scvi-tools
|
squidpy
|
stardist
|
tensorflow
|
tifffile
|
treescope
|
typing_extensions
|
zarr
Optional dependencies:
black
|
mkdocs-jupyter
|
mkdocs-material
|
mkdocstrings
|
pre-commit
|
pytest
|
ruff
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