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Author:
Rasmus Møller-Larsen, Adam Izdebski, Jan Olszewski, Pankhil Gawade, Michal Kmicikiewicz, Wojciech Zarzecki, Ewa Szczurek
License:
BSD 3-Clause License
Copyright (c) 2025, Szczurek lab
Redistribution and use in source and binary forms, with or without
modification, are permitted provided ...
Summary:
Metrics for evaluating biological sequence design.
Latest version:
0.5.0
Required dependencies:
matplotlib
|
moocore
|
numba
|
numpy
|
pandas
|
polyleven
|
scikit-learn
|
scipy
|
torch
|
tqdm
|
umap-learn
Optional dependencies:
biotite
|
deepchem
|
einops
|
fair-esm
|
ipykernel
|
ipywidgets
|
modlamp
|
mypy
|
myst-nb
|
myst-parser
|
nbsphinx
|
nbstripout
|
pre-commit
|
pytest
|
pytest-cov
|
rdkit
|
rna-fm
|
ruff
|
scanpydoc
|
seaborn
|
sphinx
|
sphinx-autodoc-typehints
|
sphinx-book-theme
|
sphinx-copybutton
|
sphinx-gallery
|
torch-geometric
|
torch-scatter
|
torchvision
|
transformers
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