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Author:
Hendrik Schultheis, Jan Detleffsen, René Wiegandt, Mette Bentsen, Yousef Alayoubi, Guilherme Valente, Micha Frederick Keßler, Brenton Joey Bruns, Dlnija Mirza, Angeline Usanayo, Jasmin Walter, Philipp Goymann, Moritz Hobein, Carsten Kuenne, Mario Looso
Summary:
Custom modules for single cell analysis
Latest version:
0.15.1
Required dependencies:
anndata
|
apybiomart
|
beartype
|
boto3
|
deprecation
|
ipympl
|
ipython
|
ipywidgets
|
jinja2
|
kneed
|
matplotlib
|
matplotlib_venn
|
numba
|
numpy
|
packaging
|
pandas
|
plotly
|
pptreport
|
psutil
|
pygithub
|
pysam
|
python-gitlab
|
pyyaml
|
qnorm
|
requests
|
scanpy
|
scikit-image
|
scipy
|
scrublet
|
seaborn
|
statsmodels
|
throttler
|
tqdm
|
upsetplot
Optional dependencies:
adjusttext
|
anndata2ri
|
bbknn
|
click
|
gseapy
|
harmonypy
|
liana
|
markerrepo
|
mofapy2
|
muon
|
networkx
|
palantir
|
peakqc
|
plotnine
|
pybedtools
|
pycirclize
|
pydeseq2
|
pygenometracks
|
pyranges
|
rpy2
|
sc-framework
|
scanorama
|
scanpro
|
scfates
|
scvelo
|
scvi-tools
|
tobias
|
uropa
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