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Author:
Linorman
License:
MIT
Summary:
Unified RNA Analysis Toolkit - ML-powered RNA sequence analysis and structure prediction
Latest version:
3.2.2
Required dependencies:
aiohttp
|
aiosignal
|
async-timeout
|
attrs
|
axial-positional-embedding
|
beautifulsoup4
|
biopython
|
biothings-client
|
biotite
|
bottleneck
|
cachetools
|
cffi
|
charset-normalizer
|
colorama
|
contextlib2
|
contourpy
|
cycler
|
cython
|
dm-tree
|
einops
|
fair-esm
|
filelock
|
fonttools
|
frozenlist
|
future
|
hf_xet
|
huggingface-hub
|
huggingface_hub
|
hydra-core
|
idna
|
importlib-metadata
|
importlib-resources
|
joblib
|
llvmlite
|
local-attention
|
lxml
|
matplotlib
|
ml-collections
|
more-itertools
|
mygene
|
numba
|
numexpr
|
numpy
|
omegaconf
|
opencv-python
|
openmm
|
packaging
|
pandas
|
pandas-datareader
|
performer-pytorch
|
pillow
|
pluggy
|
protobuf
|
psutil
|
py
|
pycparser
|
pydantic
|
pydantic-settings
|
pyparsing
|
python-box
|
python-dateutil
|
pytorch-ignite
|
pytorch-lightning
|
pyyaml
|
qmllib
|
regex
|
requests
|
rna-fm
|
sacremoses
|
scikit-learn
|
scipy
|
seaborn
|
setuptools
|
six
|
tabulate
|
tape-proteins
|
tokenizers
|
torch
|
torch-cluster
|
torch-geometric
|
torch-scatter
|
torchaudio
|
torchmetrics
|
torchsummary
|
torchvision
|
tqdm
|
transformers
|
typing-extensions
|
urllib3
|
wheel
|
yarl
Optional dependencies:
absl-py
|
aiohttp
|
aiosignal
|
async-timeout
|
autopep8
|
bleach
|
boto3
|
botocore
|
build
|
charset-normalizer
|
contourpy
|
cryptography
|
cycler
|
decorator
|
defusedxml
|
entrypoints
|
flake8
|
fonttools
|
frozenlist
|
google-auth
|
google-auth-oauthlib
|
idna
|
ipykernel
|
ipympl
|
ipython
|
ipython-genutils
|
ipywidgets
|
jedi
|
jmespath
|
jsonschema
|
jupyter
|
jupyter-client
|
jupyter-console
|
jupyter-core
|
jupyterlab
|
jupyterlab-widgets
|
jupytext
|
markdown
|
mistune
|
monkeytype
|
mypy
|
mypy-extensions
|
nbclient
|
nbconvert
|
nbformat
|
nest-asyncio
|
oauthlib
|
opencv-python
|
pandocfilters
|
parso
|
pre-commit
|
prometheus-client
|
prompt-toolkit
|
pycodestyle
|
pyflakes
|
pygments
|
pylint
|
pyopenssl
|
pyrsistent
|
pysocks
|
pytest
|
pytest-cov
|
requests-oauthlib
|
rsa
|
s3transfer
|
send2trash
|
tensorboard
|
tensorboard-data-server
|
tensorboard-plugin-wit
|
tensorboardx
|
terminado
|
testpath
|
tqdm
|
traitlets
|
twine
|
typed-ast
|
urllib3
|
wcwidth
|
webencodings
|
widgetsnbextension
|
yarl
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