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Author:
None
License:
MIT License
Copyright (c) 2020 Ma Lab at CMU
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated docu...
Summary:
Popari: a probabilistic graphical model for integrated spatial transcriptomics analysis
Latest version:
1.3.4
Required dependencies:
anndata
|
awkward
|
gseapy
|
kneed
|
leidenalg
|
louvain
|
matplotlib
|
numpy
|
ortools
|
pandas
|
pymetis
|
scanorama
|
scanpy
|
scikit-learn
|
scipy
|
seaborn
|
squidpy
|
torch
|
tqdm
|
umap-learn
Optional dependencies:
ipycanvas
|
jupyter-resource-usage
|
jupyterlab
|
jupyterlab-execute-time
|
mlflow
|
multiprocess
|
pynvml
|
pytest
|
pytest-xdist
|
toml
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