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Author:
Charlotte Rich-Griffin, Fabiola Curion
Summary:
Panpipes - multimodal single cell pipelines
Latest version:
1.2.0
Required dependencies:
apsw
|
bbknn
|
cgatcore
|
drmaa
|
gevent
|
harmonypy
|
jax
|
jaxlib
|
leidenalg
|
louvain
|
matplotlib
|
mofapy2
|
muon
|
openpyxl
|
paramiko
|
pysam
|
pyyaml
|
ruffus
|
scanorama
|
scanpy
|
scib
|
scib-metrics
|
scikit-misc
|
scirpy
|
scrublet
|
scvi-tools
|
seaborn
|
sqlalchemy
Optional dependencies:
build
|
cell2location
|
dask
|
jax
|
jaxlib
|
jupyter
|
jupyterlab
|
packaging
|
pandas
|
pytest
|
scib
|
scipy
|
scvi-tools
|
spatialdata
|
spatialdata-io
|
squidpy
|
tangram-sc
|
twine
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