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Author:
None
Summary:
MiniAn is an analysis pipeline and visualization tool inspired by both CaImAn and MIN1PIPE package specifically for Miniscope data.
Latest version:
2.0.2
Required dependencies:
bokeh
|
cvxpy
|
dask
|
datashader
|
distributed
|
ecos
|
ffmpeg-python
|
holoviews
|
jinja2
|
jupyter
|
matplotlib
|
medpy
|
natsort
|
netcdf4
|
networkx
|
numpy
|
opencv-python-headless
|
pandas
|
panel
|
pooch
|
pyfftw
|
rechunker
|
scikit-image
|
scikit-learn
|
scipy
|
scs
|
simpleitk
|
sk-video
|
sparse
|
statsmodels
|
tifffile
|
typing_extensions
|
xarray
|
zarr
Optional dependencies:
beautifulsoup4
|
ipywidgets
|
jupyter-bokeh
|
mediapy
|
minian
|
minisim
|
myst-parser
|
nbsphinx
|
numba
|
psutil
|
pydata-sphinx-theme
|
pytest
|
pytest-cov
|
rtds-action
|
ruff
|
sphinx
|
sphinx-argparse
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