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Author:
Saeys Lab, VIB spatial catalyst
License:
Academic Non-commercial Software License Agreement
The Licensed Software is developed by and on behalf of the Laboratory of Data Mining and Modelling for Biomedicine of VIB-UGent and ...
Summary:
single-cell spatial omics analysis that makes you happy.
Latest version:
0.4.4
Required dependencies:
crick
|
distributed
|
flowsom
|
harpy-vitessce
|
lazy-loader
|
leidenalg
|
ome-zarr
|
omegaconf
|
pyrootutils
|
rasterio
|
scanpy
|
scikit-learn
|
seaborn
|
session-info2
|
spatialdata
|
spatialdata-io
|
spatialdata-plot
|
tifffile
|
universal-pathlib
|
voronoi-diagram-for-polygons
|
zarr
Optional dependencies:
asv
|
bokeh
|
cellpose
|
hydra-colorlog
|
hydra-core
|
hydra-submitit-launcher
|
instanseg-torch
|
ipython
|
ipywidgets
|
joypy
|
myst-nb
|
napari
|
napari-harpy
|
napari-spatialdata
|
nbconvert
|
opencv-python-headless
|
pre-commit
|
pytest
|
pytest-cov
|
sphinx
|
sphinx-autodoc-typehints
|
sphinx-book-theme
|
sphinx-copybutton
|
sphinx-design
|
sphinx-rtd-theme
|
sphinxcontrib-bibtex
|
submitit
|
supervenn
|
textalloc
|
tox
|
tqdm
|
twine
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