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Author:
David Rodriguez Morales, Mariano Ruz Jurado, David John
License:
MIT License
Copyright (c) 2025, David Rodriguez Morales
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and asso...
Summary:
Convenient functions to streamline sc/snRNAseq data analysis workflow
Latest version:
0.0.3
Required dependencies:
adjusttext
|
anndata
|
bbknn
|
beartype
|
celltypist
|
doubletdetection
|
fast-array-utils
|
fastexcel
|
gseapy
|
harmony-pytorch
|
harmonypy
|
jupyter
|
numba
|
numpy
|
pandas
|
polars
|
pydeseq2
|
requests
|
scanorama
|
scanpro
|
scanpy
|
scib
|
scikit-image
|
scipy
|
scvi-tools
|
session-info2
|
tqdm
Optional dependencies:
adjusttext
|
anndata
|
bbknn
|
beartype
|
celltypist
|
coverage
|
docutils
|
doubletdetection
|
fastexcel
|
gseapy
|
ipykernel
|
ipython
|
jupyter
|
matplotlib
|
myst-nb
|
numba
|
numpy
|
pandas
|
polars
|
pre-commit
|
pyarrow
|
pydeseq2
|
pytest
|
scanpy
|
scanpydoc
|
scib
|
scipy
|
scvi-tools
|
seaborn
|
setuptools
|
spatialdata
|
sphinx
|
sphinx-autodoc-typehints
|
sphinx-book-theme
|
sphinx-copybutton
|
sphinx-design
|
sphinx-tabs
|
sphinxcontrib-bibtex
|
sphinxext-opengraph
|
tqdm
|
twine
|
zarr
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