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Author:
luffy
License:
BSD 3-Clause License
Copyright (c) 2026, luffy
All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, a...
Summary:
cnvturbo: A high-performance scRNA-seq CNV inference toolkit with R inferCNV-compatible HMM i6 cell-level tumor calling. The R-exact main pipeline runs on CPU + joblib (100-200x faster than R inferCNV); optional Numba/PyTorch CUDA back-ends accelerate the legacy infercnv + hmm_call_cells paths. Fully compatible with Scanpy/AnnData.
Latest version:
0.3.0
Required dependencies:
anndata
|
leidenalg
|
numpy
|
pandas
|
pybiomart
|
pycairo
|
pyreadr
|
pytoml
|
scanpy
|
session-info
|
tqdm
Optional dependencies:
docutils
|
gtfparse
|
hmmlearn
|
ipykernel
|
jupyter-client
|
myst-nb
|
numba
|
pandas
|
pre-commit
|
pycairo
|
rpy2
|
setuptools
|
sphinx
|
sphinx-autodoc-typehints
|
sphinx-book-theme
|
sphinx-copybutton
|
sphinxcontrib-bibtex
|
sphinxext-opengraph
|
torch
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