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Author:
Ofir Shorer
License:
MIT License
Copyright (c) 2026, Ofir Shorer, Asaf Pinhasi, Ron Amit & Keren Yizhak.
Permission is hereby granted, free of charge, to any person obtaining a copy
...
Summary:
Revealing pan-cancer clonal niches of T cells from single-cell RNA sequencing using contrastive learning.
Latest version:
0.1.1
Required dependencies:
adjusttext
|
airr
|
anndata
|
captum
|
colorcet
|
harmonypy
|
ipykernel
|
joblib
|
leidenalg
|
magic-impute
|
matplotlib
|
mudata
|
muon
|
nbformat
|
numba
|
numpy
|
optuna
|
pandas
|
plotly
|
pooch
|
requests
|
scanpy
|
scikit-learn
|
scipy
|
scirpy
|
scrublet
|
seaborn
|
session-info2
|
squarify
|
statsmodels
|
torch
|
tqdm
|
umap-learn
Optional dependencies:
ipython
|
myst-nb
|
myst-parser
|
sphinx
|
sphinx-autodoc-typehints
|
sphinx-book-theme
|
sphinx-copybutton
|
sphinxext-opengraph
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