PyPI page
Author:
Ivan Piacere, Anthony Palmieri
Summary:
CIMA: Chromatin Imaging Analysis is a Python package designed to facilitate the automated detection, assessment, and analysis of complex chromatin tracing experiments.
Latest version:
1.2.0
Required dependencies:
h5py
|
hdbscan
|
ipykernel
|
numpy
|
pandas
|
polars
|
pyvista
|
scikit-image
|
scikit-learn
|
scikit-network
|
scipy
|
seaborn
|
tqdm
Optional dependencies:
black
|
build
|
cima
|
keyring
|
myst-nb
|
pre-commit
|
pytest
|
ruff
|
sphinx
|
sphinx-copybutton
|
sphinx-rtd-theme
|
twine
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