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Author:
Sahand Touri
License:
MIT
Summary:
Integrated pure-Python bioinformatics platform: 47 analysis modules for sequence, genomics, transcriptomics and population genetics, 105 plotting functions, molecular cloning with 169 restriction enzymes, and a library/CLI/GUI/REST-API interface set
Latest version:
5.5.0
Required dependencies:
biopython
|
matplotlib
|
networkx
|
numpy
|
pandas
|
plotly
|
scikit-learn
|
scipy
|
seaborn
|
tqdm
Optional dependencies:
anndata
|
biosuite-ultra
|
biotite
|
cobra
|
customtkinter
|
cutadapt
|
ete3
|
fastapi
|
goatools
|
gseapy
|
httpx
|
ipython
|
ipywidgets
|
pysam
|
pytest
|
pytest-asyncio
|
pytest-cov
|
pytest-xdist
|
python-jose
|
ruff
|
scanpy
|
scikit-bio
|
shap
|
slowapi
|
statsmodels
|
umap-learn
|
uvicorn
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