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License:
The MIT License (MIT) Copyright © 2023 Angelo Lab Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the “Software”), to...
Summary:
Toolbox for analysis on segmented images from MIBI.
Latest version:
0.7.2
Required dependencies:
alpineer
|
anndata
|
ark-analysis
|
datasets
|
dill
|
feather-format
|
graphviz
|
importlib-metadata
|
ipympl
|
ipython
|
jupyterlab
|
matplotlib
|
multiprocess
|
natsort
|
numpy
|
palettable
|
pandas
|
pillow
|
pyflowsom
|
python-dateutil
|
requests
|
scikit-image
|
scikit-learn
|
scipy
|
seaborn
|
spatial-lda
|
statsmodels
|
tifffile
|
tqdm
|
umap-learn
|
xarray
|
xmltodict
|
zarr
|
zstandard
Optional dependencies:
attrs
|
cmasher
|
cmocean
|
colorcet
|
coveralls
|
jupyterlab-execute-time
|
jupyterlab-git
|
jupyterlab-lsp
|
jupyterlab-skip-traceback
|
lckr-jupyterlab-variableinspector
|
palettable
|
pytest
|
pytest-asyncio
|
pytest-cases
|
pytest-cov
|
pytest-mock
|
pytest-pycodestyle
|
pytest-randomly
|
python-lsp-server
|
scienceplots
|
testbook
|
twine
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