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Author:
Aaron Ho, McVicker Lab
License:
MIT
Summary:
Allele-specific analysis of next-generation sequencing data with high-performance multi-format variant support (VCF/cyvcf2/PGEN)
Latest version:
1.4.1
Required dependencies:
anndata
|
numpy
|
pandas
|
polars
|
pybedtools
|
pysam
|
rich
|
scanpy
|
scipy
|
typer
Optional dependencies:
bandit
|
basedpyright
|
build
|
cyvcf2
|
ipython
|
matplotlib
|
maturin
|
memory-profiler
|
mypy
|
myst-parser
|
nbsphinx
|
pgenlib
|
pip-audit
|
pre-commit
|
pydata-sphinx-theme
|
pytest
|
pytest-benchmark
|
pytest-cov
|
ruff
|
seaborn
|
sphinx
|
sphinx-autodoc-typehints
|
sphinx-copybutton
|
sphinx-design
|
twine
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