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Author:
Vizgen
License:
Apache-2.0
Summary:
Command line tool for highly parallelized processing of Vizgen data
Latest version:
1.3.3
Required dependencies:
boto3
|
dask
|
distributed
|
fastparquet
|
fsspec
|
gcsfs
|
geopandas
|
h5py
|
ipykernel
|
jinja2
|
kaleido
|
leidenalg
|
matplotlib
|
numpy
|
pandas
|
plotly
|
pretty-html-table
|
pyarrow
|
python-dotenv
|
pyvips
|
rasterio
|
s3fs
|
scanpy
|
scipy
|
shapely
|
torch
|
vpt-core
|
vpt-segmentation-packing
|
wrapt-timeout-decorator
Optional dependencies:
vpt-plugin-cellpose
|
vpt-plugin-watershed
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