PyPI page
Home page
Author:
None
License:
BSD 2-Clause License
Copyright (c) 2024, Pachter Lab
Redistribution and use in source and binary forms, with or without
modification, are permitted provided t...
Summary:
Efficient variant screening of RNA-seq and DNA-seq data using k-mer-based alignment against a reference of known variants.
Latest version:
0.1.1
Required dependencies:
anndata
|
gget
|
kb-python
|
matplotlib
|
numpy
|
pandas
|
pyarrow
|
pyfastx
|
pysam
|
scipy
|
tqdm
Optional dependencies:
adjusttext
|
bandit
|
black
|
cyvcf2
|
flake8
|
goatools
|
ipython
|
isort
|
kneed
|
matplotlib-venn
|
multiqc
|
nbdime
|
nbval
|
pykegg
|
pympler
|
pytest
|
rich
|
scanpy
|
seaborn
|
toml
|
upsetplot
Downloads last day:
0
Downloads last week:
4
Downloads last month:
9