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Author:
Yuqiu Yang, Erica DePasquale, David Adeleke, Xiangfei Xie, Yunguan Wang
Summary:
A probabilistic model for correcting mis-assigned transcripts due to cell segmentation error in imaging-based spatial transcriptomics.
Latest version:
0.0.2
Required dependencies:
anndata
|
geopandas
|
ipywidgets
|
jupyter
|
numpy
|
polars
|
pyarrow
|
pydeseq2
|
scanpy
|
shapely
|
torch
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