PyPI page
Author:
Ji Wang
Summary:
Image-based spatial transcriptomics analysis for CosMx, MERFISH, and Xenium
Latest version:
2.0.1
Required dependencies:
geopandas
|
joblib
|
matplotlib
|
natsort
|
networkx
|
numba
|
numpy
|
opencv-python
|
pandas
|
pyarrow
|
rich
|
scikit-image
|
scikit-learn
|
scipy
|
seaborn
|
shapely
|
tqdm
|
typer
Optional dependencies:
anndata
|
celltypist
|
combat
|
coverage
|
decoupler
|
geopandas
|
harmonypy
|
igraph
|
ipdb
|
leidenalg
|
pointpats
|
pydeseq2
|
pynndescent
|
pytest
|
ruff
|
scanpy
|
scikit-misc
|
scvi-tools
|
shapely
|
statsmodels
|
ty
|
umap-learn
|
zarr
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