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Author:
lzh
Summary:
A Python package for spatial transcriptomics analysis workflows.
Latest version:
0.0.1
Required dependencies:
anndata
|
cell2location
|
click
|
docopt
|
geopandas
|
geosketch
|
h5py
|
harmonypy
|
igraph
|
imageio
|
llvmlite
|
louvain
|
matplotlib
|
napari-spatialdata
|
numba
|
numpy
|
ome-zarr
|
pandas
|
pillow
|
pint
|
plotnine
|
pyarrow
|
pydeseq2
|
pyyaml
|
scanpy
|
scikit-learn
|
scipy
|
scvi-tools
|
seaborn
|
setuptools
|
shapely
|
spatialdata
|
spatialdata-io
|
spatialdata-plot
|
squidpy
|
statsmodels
|
tifffile
|
typer
|
umap-learn
|
zarr
Optional dependencies:
cellcharter
|
cellphonedb
|
cytoolz
|
dask
|
dask-expr
|
dask-image
|
ipython
|
ktplotspy
|
leidenalg
|
liana
|
loompy
|
opt-einsum
|
pims
|
pooch
|
pyogrio
|
pyro-api
|
pyro-ppl
|
pyscenic
|
pytorch-lightning
|
scikit-misc
|
torch
|
xarray
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