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Author:
Xinyan
Summary:
Integrated pipeline for spatial transcriptomics cell segmentation and annotation using QuPath, Bin2cell, and TopAct
Latest version:
1.1.1
Required dependencies:
bin2cell
|
colorcet
|
joblib
|
matplotlib
|
natsort
|
numpy
|
opencv-python
|
pandas
|
pillow
|
pyyaml
|
scanpy
|
scikit-learn
|
scipy
|
tensorflow
|
tqdm
Optional dependencies:
black
|
flake8
|
ipykernel
|
jupyter
|
kaleido
|
mypy
|
myst-parser
|
plotly
|
pytest
|
seaborn
|
sphinx
|
sphinx-rtd-theme
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