spacr

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Author: Einar Birnir Olafsson
Summary: Spatial phenotype analysis of CRISPR screens (spaCR)
Latest version: 1.5.1.4
Required dependencies: adjusttext | biopython | bottleneck | captum | cellpose | cloudpickle | cycler | czifile | fastremap | glum | gputil | gpytorch | huggingface-hub | imageio | ipython | ipywidgets | joblib | llvmlite | lxml | matplotlib | matplotlib-venn | mpmath | natsort | nd2reader | numba | numexpr | numpy | nvidia-ml-py | opencv-python-headless | openpyxl | packaging | pandas | patsy | pillow | protobuf | psutil | pyfixest | pypdf | pyqtgraph | pyside6 | pywavelets | qtawesome | readlif | requests | scikit-image | scikit-learn | scikit-posthocs | scipy | seaborn | shap | statsmodels | tables | tensorboard | tifffile | torch | torchvision | tqdm | trackpy | umap-learn | vispy | win10toast | xgboost
Optional dependencies: adlfs | aiohttp | anndata | botocore | btrack | catboost | cucim-cu12 | cuml-cu12 | cupy-cuda12x | czifile | dinocell | docutils | duckdb | faiss-cpu | fsspec | gcsfs | glum | gpytorch | hypothesis | intel-extension-for-pytorch | jax | keyring | lifelines | lightgbm | mahotas | mypy | napari | nd2reader | numcodecs | numpyro | omero-py | opencv-python | opencv-python-headless | pdfplumber | pingouin | piper-tts | psycopg | pyarrow | pycromanager | pyfixest | pylibczirw | pymc | pyqtgraph | pyside6 | pytest | pytest-qt | pytest-xdist | qtawesome | rapidocr-onnxruntime | rdkit | readlif | ruff | s3fs | samcell | threadpoolctl | timm | tomli | torch-directml | torchcam | trackastra | transformers | ultrack | ultralytics | umap-learn | vispy | win10toast | xenon | zarr

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