spacr

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Author: None
Summary: Spatial phenotype analysis of CRISPR screens (spaCR)
Latest version: 1.5.0.7
Required dependencies: adjusttext | biopython | bottleneck | captum | cellpose | cuml-cu12 | cupy-cuda12x | cycler | czifile | fastremap | glum | gputil | gpytorch | huggingface-hub | imageio | intel-extension-for-pytorch | ipython | ipywidgets | joblib | llvmlite | lxml | mahotas | matplotlib | matplotlib_venn | mpmath | natsort | nd2reader | numba | numexpr | numpy | nvidia-ml-py | opencv-python-headless | openpyxl | pandas | patsy | pillow | piper-tts | protobuf | psutil | pyfixest | pylibczirw | pypdf | pyqtgraph | pyside6 | qtawesome | readlif | requests | scikit-image | scikit-learn | scikit-posthocs | scipy | screeninfo | seaborn | shap | statsmodels | sympy | tables | tensorboard | tifffile | tomli | torch | torch-directml | torchvision | tqdm | trackastra | trackpy | ultrack | umap-learn | vispy | win10toast | xgboost
Optional dependencies: anndata | btrack | catboost | czifile | docutils | hypothesis | jax | lightgbm | mypy | napari | nd2reader | numcodecs | numpyro | omero-py | opencv-python | opencv-python-headless | pingouin | pyarrow | pymc | pyqtgraph | pyside6 | pytest | pytest-qt | pytest-xdist | qtawesome | readlif | ruff | threadpoolctl | timm | torchcam | ultralytics | umap-learn | vispy | xenon | zarr

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