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Author:
yuqiyuqitan
License:
MIT
Summary:
SPatial Analysis for CodEX data (SPACEc)
Latest version:
0.1.2
Required dependencies:
cellpose
|
concave_hull
|
deepcell
|
descartes
|
flask
|
geopandas
|
gitpython
|
igraph
|
importlib-metadata
|
joblib
|
leidenalg
|
louvain
|
matplotlib
|
networkx
|
openslide-python
|
pandas
|
panel
|
pyflowsom
|
python-louvain
|
pyvips
|
scanpy
|
scikit-image
|
scikit-learn
|
shapely
|
statsmodels
|
tensorly
|
tissuumaps
|
torch
|
tqdm
|
watchfiles
|
werkzeug
|
yellowbrick
Optional dependencies:
pytest
|
pytest-cov
|
rapids-singlecell
|
setuptools
|
torch
|
torch-cluster
|
torch-geometric
|
torch-scatter
|
torch-sparse
|
torch-spline-conv
|
torchaudio
|
torchvision
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