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Author:
Kai Zhang <kai@kzhang.org>
License:
MIT
Summary:
SnapATAC2: Single-cell epigenomics analysis pipeline
Latest version:
2.8.0
Required dependencies:
anndata
|
igraph
|
kaleido
|
macs3
|
multiprocess
|
natsort
|
numpy
|
pandas
|
plotly
|
polars
|
pooch
|
pyarrow
|
pyfaidx
|
rustworkx
|
scikit-learn
|
scipy
|
tqdm
|
typeguard
Optional dependencies:
harmonypy
|
hypothesis
|
magic-impute
|
pytest
|
scanorama
|
scanpy
|
scikit-misc
|
scvi-tools
|
umap-learn
|
xgboost
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