PyPI page
Author:
Daria Lazic
Summary:
SegTraQ - A Python toolkit for quantitative and visual quality assessment of segmentation and transcript assignment in spatial omics data.
Latest version:
0.0.7
Required dependencies:
anndata
|
geopandas
|
ipywidgets
|
joblib
|
ome-zarr
|
ovrlpy
|
rasterio
|
rtree
|
scanpy
|
setuptools
|
spatialdata
|
spatialdata-plot
|
squidpy
|
tqdm
|
typer
Optional dependencies:
black
|
coverage
|
igraph
|
ipdb
|
ipykernel
|
ipython
|
jupytext
|
leidenalg
|
myst-parser
|
nbconvert
|
nbsphinx
|
opencv-python
|
pandoc
|
pygments
|
pytest
|
pytest-cov
|
ruff
|
sphinx
|
sphinx-autodoc-typehints
|
sphinx-book-theme
|
sphinx-copybutton
|
ty
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