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Author:
Volker Baecker
License:
The MIT License (MIT) Copyright (c) 2024 Volker Baecker Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Softwar...
Summary:
3D Segment ascidian embryos using cellpose. The images are first rescaled to be isotropic and then downscaled, before cellpose is used. The resulting labels are upscaled to match the original data.
Latest version:
0.5
Required dependencies:
big-fish
|
cellpose
|
czifile
|
magicgui
|
napari-bigfish
|
napari-czifile2
|
numpy
|
qtpy
|
scikit-image
|
set-calibration
Optional dependencies:
napari
|
numpy
|
pyqt5
|
pytest
|
pytest-cov
|
pytest-qt
|
tox
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