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Author:
Binglun Shao
License:
BSD 3-Clause License
Copyright (c) 2026, Binglun Shao and the totopos authors
All rights reserved.
Redistribution and use in source and binary forms, with or ...
Summary:
Topological analysis of single-cell data: per-cluster persistent homology and periodicity-based topogene discovery.
Latest version:
0.1.0
Required dependencies:
anndata
|
dreimac
|
matplotlib
|
networkx
|
numpy
|
pandas
|
persim
|
plotly
|
ripser
|
scanpy
|
scikit-learn
|
scipy
|
torch
|
tqdm
Optional dependencies:
black
|
ipykernel
|
jupyter
|
myst-parser
|
nbsphinx
|
pytest
|
pytest-cov
|
ruff
|
sphinx
|
sphinx-rtd-theme
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