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Author:
Altana Namsaraeva, Georg Wallmann
License:
Apache License
Version 2.0, January 2004
http://www.apache.org/licenses/
TERMS AND CONDITIONS FOR USE, REPRODUCTI...
Summary:
Computational framework to generate single cell datasets from raw microscopy images.
Latest version:
1.8.0
Required dependencies:
alphabase
|
anndata
|
cellpose
|
dask
|
deprecation
|
filelock
|
h5py
|
matplotlib
|
numba
|
numpy
|
ome-zarr
|
pandas
|
pillow
|
psutil
|
py-lmd
|
pyarrow
|
pytorch-lightning
|
pyyaml
|
requests
|
scikit-image
|
scikit-learn
|
scipy
|
spatialdata
|
spatialdata-plot
|
tifffile
|
torch
|
torchmetrics
|
torchvision
|
tqdm
|
xarray
|
zarr
Optional dependencies:
ashlar
|
ipython
|
mahotas
|
matplotlib_scalebar
|
napari-spatialdata
|
nbsphinx
|
nbsphinx-link
|
networkx
|
pre-commit
|
pyqt5
|
pytest
|
scikit-fmm
|
seaborn
|
setuptools
|
spatialdata-plot
|
sphinx
|
sphinx-argparse
|
sphinx-book-theme
|
sphinx-copybutton
|
sphinx-design
|
sphinx-gallery
|
sphinx-rtd-theme
|
transformers
|
yattag
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