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Author:
Andrew J. Ashford
License:
MIT
Summary:
scOPE: single-cell Oncological Prediction Explorer — transfer-learning from bulk RNA-seq to predict per-cell mutation probabilities in scRNA-seq.
Latest version:
0.2.0
Required dependencies:
anndata
|
joblib
|
matplotlib
|
numpy
|
pandas
|
scanpy
|
scikit-learn
|
scipy
|
seaborn
Optional dependencies:
black
|
isort
|
lightgbm
|
mypy
|
nbsphinx
|
pytest
|
pytest-cov
|
ruff
|
shap
|
sphinx
|
sphinx-rtd-theme
|
umap-learn
|
xgboost
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